J3_9J1M_020
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GCCACAG*CGC*GACAC
- Length
- 15 nucleotides
- Bulged bases
- 9J1M|1|B|C|13, 9J1M|1|B|C|104
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9J1M_020 not in the Motif Atlas
- Geometric match to J3_5J7L_049
- Geometric discrepancy: 0.1939
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
9J1M|1|B|G|9
9J1M|1|B|C|10
9J1M|1|B|C|11
9J1M|1|B|A|12
9J1M|1|B|C|13
9J1M|1|B|A|14
9J1M|1|B|G|15
*
9J1M|1|B|C|67
9J1M|1|B|G|68
9J1M|1|B|C|69
*
9J1M|1|B|G|102
9J1M|1|B|A|103
9J1M|1|B|C|104
9J1M|1|B|A|105
9J1M|1|B|C|106
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- Large ribosomal subunit protein uL18
- Chain V
- Large ribosomal subunit protein bL25
- Chain W
- Large ribosomal subunit protein bL27
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