J3_9J1M_029
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- AUUAAUUC*GAAGAACCUUAC*GGCUU
- Length
- 25 nucleotides
- Bulged bases
- 9J1M|1|a|A|968, 9J1M|1|a|G|969, 9J1M|1|a|A|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9J1M_029 not in the Motif Atlas
- Geometric match to J3_4LFB_004
- Geometric discrepancy: 0.1145
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9J1M|1|a|A|948
9J1M|1|a|U|949
9J1M|1|a|U|950
9J1M|1|a|A|951
9J1M|1|a|A|952
9J1M|1|a|U|953
9J1M|1|a|U|954
9J1M|1|a|C|955
*
9J1M|1|a|G|966
9J1M|1|a|A|967
9J1M|1|a|A|968
9J1M|1|a|G|969
9J1M|1|a|A|970
9J1M|1|a|A|971
9J1M|1|a|C|972
9J1M|1|a|C|973
9J1M|1|a|U|974
9J1M|1|a|U|975
9J1M|1|a|A|976
9J1M|1|a|C|977
*
9J1M|1|a|G|1213
9J1M|1|a|G|1214
9J1M|1|a|C|1215
9J1M|1|a|U|1216
9J1M|1|a|U|1217
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain j
- Small ribosomal subunit protein uS10
- Chain m
- Small ribosomal subunit protein uS13
- Chain n
- Small ribosomal subunit protein uS14B
- Chain s
- Small ribosomal subunit protein uS19
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