J3_9J3T_008

3D structure

PDB id

9J3T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enterococcus faecalis ROOL RNA octamer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGACAAUAGACGC*GAAUAAU*AAAACUCAAACCAAG

Length

35 nucleotides

Bulged bases

9J3T|1|H|A|218, 9J3T|1|H|U|220, 9J3T|1|H|G|222

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9J3T|1|H|U|214
9J3T|1|H|G|215
9J3T|1|H|A|216
9J3T|1|H|C|217
9J3T|1|H|A|218
9J3T|1|H|A|219
9J3T|1|H|U|220
9J3T|1|H|A|221
9J3T|1|H|G|222
9J3T|1|H|A|223
9J3T|1|H|C|224
9J3T|1|H|G|225
9J3T|1|H|C|226
*
9J3T|1|H|G|236
9J3T|1|H|A|237
9J3T|1|H|A|238
9J3T|1|H|U|239
9J3T|1|H|A|240
9J3T|1|H|A|241
9J3T|1|H|U|242
*
9J3T|1|H|A|283
9J3T|1|H|A|284
9J3T|1|H|A|285
9J3T|1|H|A|286
9J3T|1|H|C|287
9J3T|1|H|U|288
9J3T|1|H|C|289
9J3T|1|H|A|290
9J3T|1|H|A|291
9J3T|1|H|A|292
9J3T|1|H|C|293
9J3T|1|H|C|294
9J3T|1|H|A|295
9J3T|1|H|A|296
9J3T|1|H|G|297

Current chains

Chain H

RNA (580-MER)

Nearby chains

Chain E

ROOL RNA

Chain G

ROOL RNA