J3_9JPM_009
3D structure
- PDB id
- 9JPM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9JPM|1|A|A|975, 9JPM|1|A|G|976, 9JPM|1|A|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9JPM_009 not in the Motif Atlas
- Geometric match to J3_8B0X_007
- Geometric discrepancy: 0.0477
- The information below is about J3_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.2
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9JPM|1|A|U|955
9JPM|1|A|U|956
9JPM|1|A|U|957
9JPM|1|A|A|958
9JPM|1|A|A|959
9JPM|1|A|U|960
9JPM|1|A|U|961
9JPM|1|A|C|962
*
9JPM|1|A|G|973
9JPM|1|A|A|974
9JPM|1|A|A|975
9JPM|1|A|G|976
9JPM|1|A|A|977
9JPM|1|A|A|978
9JPM|1|A|C|979
9JPM|1|A|C|980
9JPM|1|A|U|981
9JPM|1|A|U|982
9JPM|1|A|A|983
9JPM|1|A|C|984
*
9JPM|1|A|G|1221
9JPM|1|A|G|1222
9JPM|1|A|C|1223
9JPM|1|A|U|1224
9JPM|1|A|A|1225
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14
- Chain S
- 30S ribosomal protein S19
- Chain V
- Transfer RNA; tRNA
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