J3_9JPM_023
3D structure
- PDB id
- 9JPM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 9JPM|1|a|U|686, 9JPM|1|a|A|792, 9JPM|1|a|A|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9JPM_023 not in the Motif Atlas
- Homologous match to J3_7A0S_004
- Geometric discrepancy: 0.1677
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9JPM|1|a|U|683
9JPM|1|a|G|684
9JPM|1|a|A|685
9JPM|1|a|U|686
9JPM|1|a|C|687
9JPM|1|a|U|688
9JPM|1|a|A|689
*
9JPM|1|a|U|773
9JPM|1|a|G|774
9JPM|1|a|G|775
*
9JPM|1|a|C|791
9JPM|1|a|A|792
9JPM|1|a|A|793
9JPM|1|a|A|794
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain c
- 50S ribosomal protein L2
Coloring options: