J3_9JPM_035

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9JPM|1|a|U|2833, 9JPM|1|a|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9JPM|1|a|G|2812
9JPM|1|a|A|2813
9JPM|1|a|A|2814
9JPM|1|a|C|2815
*
9JPM|1|a|G|2831
9JPM|1|a|U|2832
9JPM|1|a|U|2833
9JPM|1|a|G|2834
9JPM|1|a|A|2835
9JPM|1|a|U|2836
*
9JPM|1|a|A|2882
9JPM|1|a|A|2883
9JPM|1|a|U|2884
9JPM|1|a|G|2885
9JPM|1|a|A|2886
9JPM|1|a|A|2887
9JPM|1|a|C|2888

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain m

50S ribosomal protein L17

Chain z

50S ribosomal protein L32