J3_9JPO_002

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

9JPO|1|A|C|48, 9JPO|1|A|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JPO_002 not in the Motif Atlas

Homologous match to J3_6CZR_058

Geometric discrepancy: 0.1397

The information below is about J3_6CZR_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.3

Basepair signature

cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9JPO|1|A|G|46
9JPO|1|A|C|47
9JPO|1|A|C|48
9JPO|1|A|U|49
9JPO|1|A|A|50
9JPO|1|A|A|51
9JPO|1|A|C|52
*
9JPO|1|A|G|359
9JPO|1|A|G|360
9JPO|1|A|G|361
9JPO|1|A|G|362
9JPO|1|A|A|363
9JPO|1|A|A|364
9JPO|1|A|U|365
9JPO|1|A|A|366
9JPO|1|A|U|367
*
9JPO|1|A|A|393
9JPO|1|A|G|394
9JPO|1|A|C|395

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16