J3_9JPO_020
3D structure
- PDB id
- 9JPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 9JPO|1|a|U|72, 9JPO|1|a|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9JPO_020 not in the Motif Atlas
- Homologous match to J3_7A0S_002
- Geometric discrepancy: 0.1714
- The information below is about J3_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9JPO|1|a|A|56
9JPO|1|a|C|57
*
9JPO|1|a|G|70
9JPO|1|a|A|71
9JPO|1|a|U|72
9JPO|1|a|A|73
9JPO|1|a|A|74
9JPO|1|a|G|75
9JPO|1|a|C|76
*
9JPO|1|a|G|110
9JPO|1|a|A|111
9JPO|1|a|U|112
9JPO|1|a|U|113
9JPO|1|a|U|114
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain s
- 50S ribosomal protein L23
- Chain x
- 50S ribosomal protein L29
Coloring options: