J3_9JPP_021
3D structure
- PDB id
- 9JPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 9JPP|1|a|U|72, 9JPP|1|a|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9JPP_021 not in the Motif Atlas
- Homologous match to J3_7A0S_002
- Geometric discrepancy: 0.1647
- The information below is about J3_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9JPP|1|a|A|56
9JPP|1|a|C|57
*
9JPP|1|a|G|70
9JPP|1|a|A|71
9JPP|1|a|U|72
9JPP|1|a|A|73
9JPP|1|a|A|74
9JPP|1|a|G|75
9JPP|1|a|C|76
*
9JPP|1|a|G|110
9JPP|1|a|A|111
9JPP|1|a|U|112
9JPP|1|a|U|113
9JPP|1|a|U|114
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain s
- 50S ribosomal protein L23
- Chain x
- 50S ribosomal protein L29
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