J3_9K0Z_007
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9K0Z_007 not in the Motif Atlas
- Geometric match to J3_4LFB_002
- Geometric discrepancy: 0.0782
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
9K0Z|1|A|C|918
9K0Z|1|A|A|919
9K0Z|1|A|A|920
9K0Z|1|A|G|921
*
9K0Z|1|A|C|1326
9K0Z|1|A|U|1327
9K0Z|1|A|A|1328
9K0Z|1|A|G|1329
9K0Z|1|A|U|1330
9K0Z|1|A|A|1331
9K0Z|1|A|A|1332
*
9K0Z|1|A|U|1355
9K0Z|1|A|G|1356
9K0Z|1|A|A|1357
9K0Z|1|A|A|1358
9K0Z|1|A|U|1359
9K0Z|1|A|A|1360
9K0Z|1|A|C|1361
9K0Z|1|A|G|1362
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
Coloring options: