J3_9K0Z_014
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGU*AGAC*GGUG
- Length
- 11 nucleotides
- Bulged bases
- 9K0Z|1|A|U|1164
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9K0Z_014 not in the Motif Atlas
- Geometric match to J3_5J7L_010
- Geometric discrepancy: 0.2181
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9K0Z|1|A|U|1096
9K0Z|1|A|G|1097
9K0Z|1|A|U|1098
*
9K0Z|1|A|A|1136
9K0Z|1|A|G|1137
9K0Z|1|A|A|1138
9K0Z|1|A|C|1139
*
9K0Z|1|A|G|1162
9K0Z|1|A|G|1163
9K0Z|1|A|U|1164
9K0Z|1|A|G|1165
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain N
- Small ribosomal subunit protein uS14B
- Chain V
- Small ribosomal subunit protein uS2
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