J3_9K0Z_018

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9K0Z_018 not in the Motif Atlas

Geometric match to J3_8P9A_046

Geometric discrepancy: 0.0795

The information below is about J3_8P9A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9K0Z|1|h|G|27
9K0Z|1|h|C|28
*
9K0Z|1|h|G|562
9K0Z|1|h|U|563
9K0Z|1|h|G|564
9K0Z|1|h|A|565
9K0Z|1|h|A|566
9K0Z|1|h|A|567
9K0Z|1|h|A|568
9K0Z|1|h|G|569
*
9K0Z|1|h|C|596
9K0Z|1|h|C|597

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL24

Chain x

Large ribosomal subunit protein bL20

Chain z

Large ribosomal subunit protein uL22