J3_9K0Z_025

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

9K0Z|1|h|U|801, 9K0Z|1|h|A|907, 9K0Z|1|h|A|908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9K0Z_025 not in the Motif Atlas

Geometric match to J3_5J7L_038

Geometric discrepancy: 0.0708

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9K0Z|1|h|U|798
9K0Z|1|h|G|799
9K0Z|1|h|A|800
9K0Z|1|h|U|801
9K0Z|1|h|C|802
9K0Z|1|h|U|803
9K0Z|1|h|A|804
*
9K0Z|1|h|U|888
9K0Z|1|h|A|889
9K0Z|1|h|G|890
*
9K0Z|1|h|C|906
9K0Z|1|h|A|907
9K0Z|1|h|A|908
9K0Z|1|h|A|909

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein bL34

Chain i

Large ribosomal subunit protein uL2