3D structure

PDB id
9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
EF-G2 bound 70S ribosome complex of M. smegmatis
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
UGACG*CC*GAAAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9K0Z_032 not in the Motif Atlas
Geometric match to J3_4V9F_017
Geometric discrepancy: 0.2401
The information below is about J3_4V9F_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08594.1
Basepair signature
cWW-tSH-tHH-F-F-cWW-F-cWW
Number of instances in this motif group
6

Unit IDs

9K0Z|1|h|U|1646
9K0Z|1|h|G|1647
9K0Z|1|h|A|1648
9K0Z|1|h|C|1649
9K0Z|1|h|G|1650
*
9K0Z|1|h|C|1784
9K0Z|1|h|C|1785
*
9K0Z|1|h|G|1788
9K0Z|1|h|A|1789
9K0Z|1|h|A|1790
9K0Z|1|h|A|1791
9K0Z|1|h|A|1792
9K0Z|1|h|G|1793

Current chains

Chain h
23S ribosomal RNA

Nearby chains

Chain i
Large ribosomal subunit protein uL2

Coloring options:


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