J3_9K10_009

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9K10_009 not in the Motif Atlas

Geometric match to J3_5J7L_039

Geometric discrepancy: 0.0737

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

9K10|1|A|C|813
9K10|1|A|A|814
9K10|1|A|G|815
*
9K10|1|A|C|847
9K10|1|A|G|848
9K10|1|A|A|849
9K10|1|A|A|850
9K10|1|A|C|851
*
9K10|1|A|G|875
9K10|1|A|A|876
9K10|1|A|U|877
9K10|1|A|G|878

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2