J3_9K2Z_001

3D structure

PDB id

9K2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HfmIscB-omega RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUUA*UACG*CAUUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K2Z|1|B|C|106
9K2Z|1|B|U|107
9K2Z|1|B|U|108
9K2Z|1|B|A|109
*
9K2Z|1|B|U|149
9K2Z|1|B|A|150
9K2Z|1|B|C|151
9K2Z|1|B|G|152
*
9K2Z|1|B|C|277
9K2Z|1|B|A|278
9K2Z|1|B|U|279
9K2Z|1|B|U|280
9K2Z|1|B|G|281

Current chains

Chain B

Omega RNA

Nearby chains

Chain A

HfmIscB