J3_9K2Z_002

3D structure

PDB id

9K2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HfmIscB-omega RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UUAAAGAC*GAG*CAUAUA

Length

17 nucleotides

Bulged bases

9K2Z|1|B|U|265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K2Z|1|B|U|165
9K2Z|1|B|U|166
9K2Z|1|B|A|167
9K2Z|1|B|A|168
9K2Z|1|B|A|169
9K2Z|1|B|G|170
9K2Z|1|B|A|171
9K2Z|1|B|C|172
*
9K2Z|1|B|G|209
9K2Z|1|B|A|210
9K2Z|1|B|G|211
*
9K2Z|1|B|C|261
9K2Z|1|B|A|262
9K2Z|1|B|U|263
9K2Z|1|B|A|264
9K2Z|1|B|U|265
9K2Z|1|B|A|266

Current chains

Chain B

Omega RNA

Nearby chains

Chain A

HfmIscB