J3_9KDT_002

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9KDT|1|L5|C|216, 9KDT|1|L5|C|217, 9KDT|1|L5|A|218, 9KDT|1|L5|G|219, 9KDT|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|C|196
9KDT|1|L5|A|197
9KDT|1|L5|A|198
9KDT|1|L5|G|199
*
9KDT|1|L5|C|215
9KDT|1|L5|C|216
9KDT|1|L5|C|217
9KDT|1|L5|A|218
9KDT|1|L5|G|219
9KDT|1|L5|C|220
9KDT|1|L5|C|221
9KDT|1|L5|C|222
9KDT|1|L5|G|223
9KDT|1|L5|U|224
9KDT|1|L5|G|225
9KDT|1|L5|G|226
9KDT|1|L5|A|227
9KDT|1|L5|C|228
*
9KDT|1|L5|G|240
9KDT|1|L5|G|241
9KDT|1|L5|U|242
9KDT|1|L5|A|243
9KDT|1|L5|G|244

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LY

Large ribosomal subunit protein uL24