J3_9KDT_005
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 9KDT|1|L5|G|408, 9KDT|1|L5|G|412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDT|1|L5|U|379
9KDT|1|L5|U|380
9KDT|1|L5|G|381
9KDT|1|L5|A|382
9KDT|1|L5|A|383
9KDT|1|L5|A|384
9KDT|1|L5|A|385
9KDT|1|L5|G|386
9KDT|1|L5|A|387
9KDT|1|L5|A|388
9KDT|1|L5|C|389
*
9KDT|1|L5|G|400
9KDT|1|L5|A|401
9KDT|1|L5|G|402
9KDT|1|L5|U|403
9KDT|1|L5|U|404
9KDT|1|L5|C|405
9KDT|1|L5|A|406
9KDT|1|L5|A|407
9KDT|1|L5|G|408
9KDT|1|L5|A|409
9KDT|1|L5|G|410
9KDT|1|L5|G|411
9KDT|1|L5|G|412
9KDT|1|L5|C|413
9KDT|1|L5|G|414
*
9KDT|1|L8|C|19
9KDT|1|L8|A|20
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
- Chain L8
- Mus musculus 5.8S ribosomal RNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LP
- Large ribosomal subunit protein uL22
- Chain LY
- Large ribosomal subunit protein uL24
- Chain Ll
- Large ribosomal subunit protein eL39-like
- Chain Z
- Nascent peptide
Coloring options: