J3_9KDT_006

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

9KDT|1|L5|C|712, 9KDT|1|L5|U|1110

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|C|450
9KDT|1|L5|A|451
9KDT|1|L5|G|452
9KDT|1|L5|U|453
9KDT|1|L5|C|454
*
9KDT|1|L5|G|709
9KDT|1|L5|U|710
9KDT|1|L5|G|711
9KDT|1|L5|C|712
9KDT|1|L5|G|713
*
9KDT|1|L5|C|1107
9KDT|1|L5|G|1108
9KDT|1|L5|A|1109
9KDT|1|L5|U|1110
9KDT|1|L5|G|1111

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Le

Large ribosomal subunit protein eL32

Chain Lf

Large ribosomal subunit protein eL33