J3_9KDT_008

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CAG*CGUAG*UCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|C|1360
9KDT|1|L5|A|1361
9KDT|1|L5|G|1362
*
9KDT|1|L5|C|1394
9KDT|1|L5|G|1395
9KDT|1|L5|U|1396
9KDT|1|L5|A|1397
9KDT|1|L5|G|1398
*
9KDT|1|L5|U|1423
9KDT|1|L5|C|1424
9KDT|1|L5|C|1425
9KDT|1|L5|G|1426

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain LR

Large ribosomal subunit protein eL19

Chain Lp

Large ribosomal subunit protein eL43