J3_9KDT_010

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9KDT|1|L5|A|2153, 9KDT|1|L5|U|2155

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|C|2150
9KDT|1|L5|G|2151
9KDT|1|L5|A|2152
9KDT|1|L5|A|2153
9KDT|1|L5|G|2154
9KDT|1|L5|U|2155
9KDT|1|L5|G|2156
*
9KDT|1|L5|C|2559
9KDT|1|L5|A|2560
9KDT|1|L5|A|2561
*
9KDT|1|L5|U|2573
9KDT|1|L5|C|2574
9KDT|1|L5|U|2575
9KDT|1|L5|G|2576

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain Lg

Large ribosomal subunit protein eL34