J3_9KDT_011

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

9KDT|1|L5|U|2542, 9KDT|1|L5|A|2543, 9KDT|1|L5|U|2544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|G|2159
9KDT|1|L5|A|2160
9KDT|1|L5|A|2161
9KDT|1|L5|G|2162
*
9KDT|1|L5|C|2539
9KDT|1|L5|C|2540
9KDT|1|L5|A|2541
9KDT|1|L5|U|2542
9KDT|1|L5|A|2543
9KDT|1|L5|U|2544
9KDT|1|L5|C|2545
*
9KDT|1|L5|G|2554
9KDT|1|L5|U|2555
9KDT|1|L5|C|2556

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain Lg

Large ribosomal subunit protein eL34

Chain Lj

Large ribosomal subunit protein eL37

Chain Ll

Large ribosomal subunit protein eL39-like