J3_9KDT_012

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UCGGUC*GGAGU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|U|2197
9KDT|1|L5|C|2198
9KDT|1|L5|G|2199
9KDT|1|L5|G|2200
9KDT|1|L5|U|2201
9KDT|1|L5|C|2202
*
9KDT|1|L5|G|2272
9KDT|1|L5|G|2273
9KDT|1|L5|A|2274
9KDT|1|L5|G|2275
9KDT|1|L5|U|2276
*
9KDT|1|L5|A|2293
9KDT|1|L5|A|2294

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LX

Large ribosomal subunit protein uL23

Chain Lg

Large ribosomal subunit protein eL34

Chain Lk

Large ribosomal subunit protein eL38

Chain Ll

Large ribosomal subunit protein eL39-like