J3_9KDT_014

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

9KDT|1|L5|U|2517

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|A|2308
9KDT|1|L5|G|2309
9KDT|1|L5|A|2310
9KDT|1|L5|U|2311
9KDT|1|L5|G|2312
*
9KDT|1|L5|C|2326
9KDT|1|L5|A|2327
9KDT|1|L5|G|2328
9KDT|1|L5|U|2329
*
9KDT|1|L5|A|2511
9KDT|1|L5|G|2512
9KDT|1|L5|G|2513
9KDT|1|L5|G|2514
9KDT|1|L5|U|2515
9KDT|1|L5|G|2516
9KDT|1|L5|U|2517
9KDT|1|L5|A|2518
9KDT|1|L5|A|2519
9KDT|1|L5|A|2520
9KDT|1|L5|U|2521

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LZ

Large ribosomal subunit protein eL27