J3_9KDT_017

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

9KDT|1|L5|G|3727

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|C|3594
9KDT|1|L5|G|3595
9KDT|1|L5|G|3596
*
9KDT|1|L5|C|3725
9KDT|1|L5|U|3726
9KDT|1|L5|G|3727
9KDT|1|L5|A|3728
9KDT|1|L5|C|3729
*
9KDT|1|L5|G|3821
9KDT|1|L5|G|3822
9KDT|1|L5|A|3823
9KDT|1|L5|C|3824
9KDT|1|L5|A|3825
9KDT|1|L5|G|3826

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain LG

Large ribosomal subunit protein eL8

Chain LN

Large ribosomal subunit protein eL15