J3_9KDT_020

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9KDT|1|L5|A|4117, 9KDT|1|L5|U|4118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|U|4116
9KDT|1|L5|A|4117
9KDT|1|L5|U|4118
9KDT|1|L5|C|4119
*
9KDT|1|L5|G|4144
9KDT|1|L5|U|4145
9KDT|1|L5|U|4146
*
9KDT|1|L5|A|4160
9KDT|1|L5|C|4161
9KDT|1|L5|U|4162
9KDT|1|L5|A|4163
9KDT|1|L5|A|4164
9KDT|1|L5|U|4165
9KDT|1|L5|A|4166

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

Large ribosomal subunit protein uL14