J3_9KDT_021

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUUG*CGUUC*GUUGAACGCACGUUC

Length

24 nucleotides

Bulged bases

9KDT|1|L5|U|4528, 9KDT|1|L5|U|4583, 9KDT|1|L5|U|4584, 9KDT|1|L5|A|4586, 9KDT|1|L5|C|4588, 9KDT|1|L5|A|4591, 9KDT|1|L5|C|4592

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|G|4405
9KDT|1|L5|U|4406
9KDT|1|L5|U|4407
9KDT|1|L5|G|4408
*
9KDT|1|L5|C|4525
9KDT|1|L5|G|4526
9KDT|1|L5|U|4527
9KDT|1|L5|U|4528
9KDT|1|L5|C|4529
*
9KDT|1|L5|G|4582
9KDT|1|L5|U|4583
9KDT|1|L5|U|4584
9KDT|1|L5|G|4585
9KDT|1|L5|A|4586
9KDT|1|L5|A|4587
9KDT|1|L5|C|4588
9KDT|1|L5|G|4589
9KDT|1|L5|C|4590
9KDT|1|L5|A|4591
9KDT|1|L5|C|4592
9KDT|1|L5|G|4593
9KDT|1|L5|U|4594
9KDT|1|L5|U|4595
9KDT|1|L5|C|4596

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

Large ribosomal subunit protein eL14

Chain LO

Large ribosomal subunit protein uL13

Chain Lf

Large ribosomal subunit protein eL33