J3_9KDT_022

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

9KDT|1|L5|U|4637, 9KDT|1|L5|C|4638

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|C|4618
9KDT|1|L5|A|4619
9KDT|1|L5|U|4620
*
9KDT|1|L5|G|4634
9KDT|1|L5|C|4635
9KDT|1|L5|U|4636
9KDT|1|L5|U|4637
9KDT|1|L5|C|4638
9KDT|1|L5|U|4639
*
9KDT|1|L5|A|4708
9KDT|1|L5|A|4709
9KDT|1|L5|G|4710
9KDT|1|L5|G|4711

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

Large ribosomal subunit protein uL22