J3_9KDT_026
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UGGA*UUAAGAG*CAUUA
- Length
- 16 nucleotides
- Bulged bases
- 9KDT|1|S2|G|922
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDT|1|S2|U|683
9KDT|1|S2|G|684
9KDT|1|S2|G|685
9KDT|1|S2|A|686
*
9KDT|1|S2|U|918
9KDT|1|S2|U|919
9KDT|1|S2|A|920
9KDT|1|S2|A|921
9KDT|1|S2|G|922
9KDT|1|S2|A|923
9KDT|1|S2|G|924
*
9KDT|1|S2|C|1020
9KDT|1|S2|A|1021
9KDT|1|S2|U|1022
9KDT|1|S2|U|1023
9KDT|1|S2|A|1024
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SH
- Small ribosomal subunit protein eS7
- Chain SL
- Small ribosomal subunit protein uS17
- Chain SN
- Small ribosomal subunit protein uS15
- Chain SW
- Small ribosomal subunit protein uS8
- Chain SX
- Small ribosomal subunit protein uS12
- Chain Sb
- Small ribosomal subunit protein eS27
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