J3_9KDT_027

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AGAGU*GCAG*CUGGAU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|S2|A|817
9KDT|1|S2|G|818
9KDT|1|S2|A|819
9KDT|1|S2|G|820
9KDT|1|S2|U|821
*
9KDT|1|S2|G|829
9KDT|1|S2|C|830
9KDT|1|S2|A|831
9KDT|1|S2|G|832
*
9KDT|1|S2|C|844
9KDT|1|S2|U|845
9KDT|1|S2|G|846
9KDT|1|S2|G|847
9KDT|1|S2|A|848
9KDT|1|S2|U|849

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4

Chain SJ

Small ribosomal subunit protein uS4

Chain SY

Small ribosomal subunit protein eS24