J3_9KDT_031

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|S2|U|1226
9KDT|1|S2|G|1227
9KDT|1|S2|G|1228
9KDT|1|S2|A|1229
*
9KDT|1|S2|U|1531
9KDT|1|S2|A|1532
9KDT|1|S2|C|1533
*
9KDT|1|S2|G|1639
9KDT|1|S2|G|1640
9KDT|1|S2|A|1641
9KDT|1|S2|A|1642

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain S6

Transfer RNA; tRNA

Chain S7

Transfer RNA; tRNA

Chain SF

Small ribosomal subunit protein uS7

Chain SQ

Small ribosomal subunit protein uS9

Chain ST

Small ribosomal subunit protein eS19