J3_9KDT_032
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9KDT|1|S2|U|1240, 9KDT|1|S2|G|1257, 9KDT|1|S2|A|1259, 9KDT|1|S2|A|1261
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDT|1|S2|C|1238
9KDT|1|S2|U|1239
9KDT|1|S2|U|1240
9KDT|1|S2|A|1241
9KDT|1|S2|A|1242
9KDT|1|S2|U|1243
9KDT|1|S2|U|1244
9KDT|1|S2|U|1245
*
9KDT|1|S2|G|1256
9KDT|1|S2|G|1257
9KDT|1|S2|G|1258
9KDT|1|S2|A|1259
9KDT|1|S2|A|1260
9KDT|1|S2|A|1261
9KDT|1|S2|C|1262
9KDT|1|S2|C|1263
9KDT|1|S2|U|1264
9KDT|1|S2|C|1265
9KDT|1|S2|A|1266
9KDT|1|S2|C|1267
*
9KDT|1|S2|G|1517
9KDT|1|S2|G|1518
9KDT|1|S2|C|1519
9KDT|1|S2|U|1520
9KDT|1|S2|G|1521
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SP
- Small ribosomal subunit protein uS19
- Chain SS
- Small ribosomal subunit protein uS13
- Chain SU
- Small ribosomal subunit protein uS10
- Chain Sd
- Small ribosomal subunit protein uS14
Coloring options: