J3_9KDT_034
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDT|1|S2|U|1341
9KDT|1|S2|C|1342
9KDT|1|S2|U|1343
9KDT|1|S2|U|1344
9KDT|1|S2|A|1345
9KDT|1|S2|G|1346
*
9KDT|1|S2|C|1385
9KDT|1|S2|G|1386
9KDT|1|S2|A|1387
9KDT|1|S2|G|1388
9KDT|1|S2|A|1389
9KDT|1|S2|C|1390
*
9KDT|1|S2|G|1482
9KDT|1|S2|C|1483
9KDT|1|S2|A|1484
9KDT|1|S2|A|1485
9KDT|1|S2|U|1486
9KDT|1|S2|A|1487
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SC
- Small ribosomal subunit protein uS5
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SQ
- Small ribosomal subunit protein uS9
- Chain SR
- Small ribosomal subunit protein eS17
- Chain SU
- Small ribosomal subunit protein uS10
- Chain Sd
- Small ribosomal subunit protein uS14
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