J3_9KDU_001
3D structure
- PDB id
- 9KDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CAGCG*CGUACG*CCGG
- Length
- 15 nucleotides
- Bulged bases
- 9KDU|1|L5|C|159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDU|1|L5|C|112
9KDU|1|L5|A|113
9KDU|1|L5|G|114
9KDU|1|L5|C|115
9KDU|1|L5|G|116
*
9KDU|1|L5|C|155
9KDU|1|L5|G|156
9KDU|1|L5|U|157
9KDU|1|L5|A|158
9KDU|1|L5|C|159
9KDU|1|L5|G|160
*
9KDU|1|L5|C|274
9KDU|1|L5|C|275
9KDU|1|L5|G|276
9KDU|1|L5|G|277
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LG
- Large ribosomal subunit protein eL8
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LN
- Large ribosomal subunit protein eL15
- Chain Lh
- Large ribosomal subunit protein uL29
- Chain Li
- Large ribosomal subunit protein eL36
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