J3_9KDU_002
3D structure
- PDB id
- 9KDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 9KDU|1|L5|U|353, 9KDU|1|L5|A|361, 9KDU|1|L8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDU|1|L5|C|350
9KDU|1|L5|G|351
9KDU|1|L5|A|352
9KDU|1|L5|U|353
9KDU|1|L5|A|354
9KDU|1|L5|G|355
9KDU|1|L5|U|356
9KDU|1|L5|C|357
9KDU|1|L5|A|358
9KDU|1|L5|A|359
9KDU|1|L5|C|360
9KDU|1|L5|A|361
9KDU|1|L5|A|362
9KDU|1|L5|G|363
9KDU|1|L5|U|364
9KDU|1|L5|A|365
9KDU|1|L5|C|366
*
9KDU|1|L5|G|373
9KDU|1|L5|G|374
9KDU|1|L5|A|375
9KDU|1|L5|A|376
9KDU|1|L5|A|377
9KDU|1|L5|G|378
*
9KDU|1|L8|C|21
9KDU|1|L8|U|22
9KDU|1|L8|C|23
9KDU|1|L8|G|24
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
- Chain L8
- Mus musculus 5.8S ribosomal RNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LY
- Large ribosomal subunit protein uL24
- Chain Lj
- Large ribosomal subunit protein eL37
- Chain Ll
- Large ribosomal subunit protein eL39-like
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