J3_9KDU_015

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|L5|A|2352
9KDU|1|L5|G|2353
9KDU|1|L5|A|2354
9KDU|1|L5|A|2355
9KDU|1|L5|G|2356
*
9KDU|1|L5|C|2491
9KDU|1|L5|C|2492
*
9KDU|1|L5|G|2496
9KDU|1|L5|A|2497
9KDU|1|L5|A|2498
9KDU|1|L5|A|2499
9KDU|1|L5|A|2500
9KDU|1|L5|U|2501

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain Lg

Large ribosomal subunit protein eL34

Chain Lp

Large ribosomal subunit protein eL43