J3_9KDU_018

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CUC*GAG*CAAAAG

Length

12 nucleotides

Bulged bases

9KDU|1|L5|A|3933, 9KDU|1|L5|A|3935

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|L5|C|3894
9KDU|1|L5|U|3895
9KDU|1|L5|C|3896
*
9KDU|1|L5|G|3920
9KDU|1|L5|A|3921
9KDU|1|L5|G|3922
*
9KDU|1|L5|C|3931
9KDU|1|L5|A|3932
9KDU|1|L5|A|3933
9KDU|1|L5|A|3934
9KDU|1|L5|A|3935
9KDU|1|L5|G|3936

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LJ

Large ribosomal subunit protein uL5

Chain LT

Large ribosomal subunit protein eL21

Chain S7

Transfer RNA; tRNA