J3_9KDU_021

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

9KDU|1|L5|U|4637, 9KDU|1|L5|C|4638

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|L5|C|4618
9KDU|1|L5|A|4619
9KDU|1|L5|U|4620
*
9KDU|1|L5|G|4634
9KDU|1|L5|C|4635
9KDU|1|L5|U|4636
9KDU|1|L5|U|4637
9KDU|1|L5|C|4638
9KDU|1|L5|U|4639
*
9KDU|1|L5|A|4708
9KDU|1|L5|A|4709
9KDU|1|L5|G|4710
9KDU|1|L5|G|4711

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

Large ribosomal subunit protein uL22

Chain Ld

Large ribosomal subunit protein eL31