J3_9KDU_024

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CAAAGAUUAAGCCAUGC*GCAGGCGCGCAAAUUAC*GUAGUGACG

Length

43 nucleotides

Bulged bases

9KDU|1|S2|A|45, 9KDU|1|S2|A|46, 9KDU|1|S2|U|488, 9KDU|1|S2|U|489, 9KDU|1|S2|A|517

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|S2|C|37
9KDU|1|S2|A|38
9KDU|1|S2|A|39
9KDU|1|S2|A|40
9KDU|1|S2|G|41
9KDU|1|S2|A|42
9KDU|1|S2|U|43
9KDU|1|S2|U|44
9KDU|1|S2|A|45
9KDU|1|S2|A|46
9KDU|1|S2|G|47
9KDU|1|S2|C|48
9KDU|1|S2|C|49
9KDU|1|S2|A|50
9KDU|1|S2|U|51
9KDU|1|S2|G|52
9KDU|1|S2|C|53
*
9KDU|1|S2|G|475
9KDU|1|S2|C|476
9KDU|1|S2|A|477
9KDU|1|S2|G|478
9KDU|1|S2|G|479
9KDU|1|S2|C|480
9KDU|1|S2|G|481
9KDU|1|S2|C|482
9KDU|1|S2|G|483
9KDU|1|S2|C|484
9KDU|1|S2|A|485
9KDU|1|S2|A|486
9KDU|1|S2|A|487
9KDU|1|S2|U|488
9KDU|1|S2|U|489
9KDU|1|S2|A|490
9KDU|1|S2|C|491
*
9KDU|1|S2|G|511
9KDU|1|S2|U|512
9KDU|1|S2|A|513
9KDU|1|S2|G|514
9KDU|1|S2|U|515
9KDU|1|S2|G|516
9KDU|1|S2|A|517
9KDU|1|S2|C|518
9KDU|1|S2|G|519

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4

Chain SJ

Small ribosomal subunit protein uS4

Chain SX

Small ribosomal subunit protein uS12

Chain SY

Small ribosomal subunit protein eS24