J3_9KDU_027
3D structure
- PDB id
- 9KDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 9KDU|1|S2|G|992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDU|1|S2|A|939
9KDU|1|S2|U|940
9KDU|1|S2|U|941
9KDU|1|S2|C|942
*
9KDU|1|S2|G|986
9KDU|1|S2|G|987
9KDU|1|S2|A|988
9KDU|1|S2|C|989
9KDU|1|S2|C|990
9KDU|1|S2|A|991
9KDU|1|S2|G|992
9KDU|1|S2|A|993
9KDU|1|S2|G|994
*
9KDU|1|S2|C|1001
9KDU|1|S2|A|1002
9KDU|1|S2|U|1003
9KDU|1|S2|U|1004
9KDU|1|S2|U|1005
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain Lp
- Large ribosomal subunit protein eL43
- Chain SB
- Small ribosomal subunit protein eS1
- Chain SN
- Small ribosomal subunit protein uS15
- Chain SO
- Small ribosomal subunit protein uS11
- Chain Sa
- Small ribosomal subunit protein eS26
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