J3_9KDU_035
3D structure
- PDB id
- 9KDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CUGGC*GGACAAG*CCCGAGAUUG
- Length
- 22 nucleotides
- Bulged bases
- 9KDU|1|S2|U|1478
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDU|1|S2|C|1392
9KDU|1|S2|U|1393
9KDU|1|S2|G|1394
9KDU|1|S2|G|1395
9KDU|1|S2|C|1396
*
9KDU|1|S2|G|1451
9KDU|1|S2|G|1452
9KDU|1|S2|A|1453
9KDU|1|S2|C|1454
9KDU|1|S2|A|1455
9KDU|1|S2|A|1456
9KDU|1|S2|G|1457
*
9KDU|1|S2|C|1471
9KDU|1|S2|C|1472
9KDU|1|S2|C|1473
9KDU|1|S2|G|1474
9KDU|1|S2|A|1475
9KDU|1|S2|G|1476
9KDU|1|S2|A|1477
9KDU|1|S2|U|1478
9KDU|1|S2|U|1479
9KDU|1|S2|G|1480
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SF
- Small ribosomal subunit protein uS7
- Chain SQ
- Small ribosomal subunit protein uS9
- Chain SR
- Small ribosomal subunit protein eS17
- Chain SU
- Small ribosomal subunit protein uS10
- Chain Sc
- Small ribosomal subunit protein eS28
- Chain Sd
- Small ribosomal subunit protein uS14
- Chain Sg
- Small ribosomal subunit protein RACK1
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