J3_9KDW_002

3D structure

PDB id

9KDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9KDW|1|L5|C|216, 9KDW|1|L5|C|217, 9KDW|1|L5|A|218, 9KDW|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDW|1|L5|C|196
9KDW|1|L5|A|197
9KDW|1|L5|A|198
9KDW|1|L5|G|199
*
9KDW|1|L5|C|215
9KDW|1|L5|C|216
9KDW|1|L5|C|217
9KDW|1|L5|A|218
9KDW|1|L5|G|219
9KDW|1|L5|C|220
9KDW|1|L5|C|221
9KDW|1|L5|C|222
9KDW|1|L5|G|223
9KDW|1|L5|U|224
9KDW|1|L5|G|225
9KDW|1|L5|G|226
9KDW|1|L5|A|227
9KDW|1|L5|C|228
*
9KDW|1|L5|G|240
9KDW|1|L5|G|241
9KDW|1|L5|U|242
9KDW|1|L5|A|243
9KDW|1|L5|G|244

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LY

Large ribosomal subunit protein uL24