J3_9KDW_006

3D structure

PDB id

9KDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

9KDW|1|L5|C|712, 9KDW|1|L5|U|1110

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDW|1|L5|C|450
9KDW|1|L5|A|451
9KDW|1|L5|G|452
9KDW|1|L5|U|453
9KDW|1|L5|C|454
*
9KDW|1|L5|G|709
9KDW|1|L5|U|710
9KDW|1|L5|G|711
9KDW|1|L5|C|712
9KDW|1|L5|G|713
*
9KDW|1|L5|C|1107
9KDW|1|L5|G|1108
9KDW|1|L5|A|1109
9KDW|1|L5|U|1110
9KDW|1|L5|G|1111

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Le

Large ribosomal subunit protein eL32

Chain Lf

Large ribosomal subunit protein eL33