J3_9KDW_007

3D structure

PDB id

9KDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

9KDW|1|L5|A|1348, 9KDW|1|L5|G|1455, 9KDW|1|L5|A|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDW|1|L5|U|1345
9KDW|1|L5|G|1346
9KDW|1|L5|A|1347
9KDW|1|L5|A|1348
9KDW|1|L5|C|1349
9KDW|1|L5|U|1350
9KDW|1|L5|A|1351
*
9KDW|1|L5|U|1436
9KDW|1|L5|A|1437
9KDW|1|L5|G|1438
*
9KDW|1|L5|C|1454
9KDW|1|L5|G|1455
9KDW|1|L5|A|1456
9KDW|1|L5|A|1457

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain LN

Large ribosomal subunit protein eL15

Chain Lj

Large ribosomal subunit protein eL37