J3_9KDW_016

3D structure

PDB id

9KDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDW|1|L5|A|2352
9KDW|1|L5|G|2353
9KDW|1|L5|A|2354
9KDW|1|L5|A|2355
9KDW|1|L5|G|2356
*
9KDW|1|L5|C|2491
9KDW|1|L5|C|2492
*
9KDW|1|L5|G|2496
9KDW|1|L5|A|2497
9KDW|1|L5|A|2498
9KDW|1|L5|A|2499
9KDW|1|L5|A|2500
9KDW|1|L5|U|2501

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain Lg

Large ribosomal subunit protein eL34

Chain Lp

Large ribosomal subunit protein eL43