J3_9KKF_001

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9KKF_001 not in the Motif Atlas

Homologous match to J3_9PN5_027

Geometric discrepancy: 0.1094

The information below is about J3_9PN5_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9KKF|1|S2|A|40
9KKF|1|S2|G|41
*
9KKF|1|S2|C|481
9KKF|1|S2|G|482
9KKF|1|S2|C|483
9KKF|1|S2|A|484
9KKF|1|S2|A|485
9KKF|1|S2|A|486
9KKF|1|S2|U|487
*
9KKF|1|S2|A|512
9KKF|1|S2|G|513
9KKF|1|S2|U|514

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23