J3_9KMU_008

3D structure

PDB id

9KMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGGCCCGGAC*GGGUGGUGGUGCAUGG*UCUGUGAUGCCCUUAGAUGUCCGG

Length

50 nucleotides

Bulged bases

9KMU|1|2|G|1275, 9KMU|1|2|G|1324, 9KMU|1|2|U|1326, 9KMU|1|2|C|1331, 9KMU|1|2|U|1333, 9KMU|1|2|U|1494, 9KMU|1|2|G|1495, 9KMU|1|2|G|1497, 9KMU|1|2|C|1502, 9KMU|1|2|C|1503, 9KMU|1|2|U|1504, 9KMU|1|2|U|1505, 9KMU|1|2|G|1507, 9KMU|1|2|U|1509

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMU|1|2|C|1268
9KMU|1|2|G|1269
9KMU|1|2|G|1270
9KMU|1|2|C|1271
9KMU|1|2|C|1272
9KMU|1|2|C|1273
9KMU|1|2|G|1274
9KMU|1|2|G|1275
9KMU|1|2|A|1276
9KMU|1|2|C|1277
*
9KMU|1|2|G|1320
9KMU|1|2|G|1321
9KMU|1|2|G|1322
9KMU|1|2|U|1323
9KMU|1|2|G|1324
9KMU|1|2|G|1325
9KMU|1|2|U|1326
9KMU|1|2|G|1327
9KMU|1|2|G|1328
9KMU|1|2|U|1329
9KMU|1|2|G|1330
9KMU|1|2|C|1331
9KMU|1|2|A|1332
9KMU|1|2|U|1333
9KMU|1|2|G|1334
9KMU|1|2|G|1335
*
9KMU|1|2|U|1492
9KMU|1|2|C|1493
9KMU|1|2|U|1494
9KMU|1|2|G|1495
9KMU|1|2|U|1496
9KMU|1|2|G|1497
9KMU|1|2|A|1498
9KMU|1|2|U|1499
9KMU|1|2|G|1500
9KMU|1|2|C|1501
9KMU|1|2|C|1502
9KMU|1|2|C|1503
9KMU|1|2|U|1504
9KMU|1|2|U|1505
9KMU|1|2|A|1506
9KMU|1|2|G|1507
9KMU|1|2|A|1508
9KMU|1|2|U|1509
9KMU|1|2|G|1510
9KMU|1|2|U|1511
9KMU|1|2|C|1512
9KMU|1|2|C|1513
9KMU|1|2|G|1514
9KMU|1|2|G|1515

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain K

Small ribosomal subunit protein eS10

Chain M

Small ribosomal subunit protein eS12

Chain P

Small ribosomal subunit protein uS19

Chain S

Small ribosomal subunit protein uS13

Chain U

Small ribosomal subunit protein uS10

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31