J3_9KMU_011

3D structure

PDB id

9KMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUGGCAUGC*GAGGGACAAG*CCCGAGAUUG

Length

29 nucleotides

Bulged bases

9KMU|1|2|A|1396, 9KMU|1|2|U|1397, 9KMU|1|2|U|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMU|1|2|C|1391
9KMU|1|2|U|1392
9KMU|1|2|G|1393
9KMU|1|2|G|1394
9KMU|1|2|C|1395
9KMU|1|2|A|1396
9KMU|1|2|U|1397
9KMU|1|2|G|1398
9KMU|1|2|C|1399
*
9KMU|1|2|G|1447
9KMU|1|2|A|1448
9KMU|1|2|G|1449
9KMU|1|2|G|1450
9KMU|1|2|G|1451
9KMU|1|2|A|1452
9KMU|1|2|C|1453
9KMU|1|2|A|1454
9KMU|1|2|A|1455
9KMU|1|2|G|1456
*
9KMU|1|2|C|1470
9KMU|1|2|C|1471
9KMU|1|2|C|1472
9KMU|1|2|G|1473
9KMU|1|2|A|1474
9KMU|1|2|G|1475
9KMU|1|2|A|1476
9KMU|1|2|U|1477
9KMU|1|2|U|1478
9KMU|1|2|G|1479

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain F

Small ribosomal subunit protein uS7

Chain Q

Small ribosomal subunit protein uS9

Chain R

Small ribosomal subunit protein eS17

Chain U

Small ribosomal subunit protein uS10

Chain c

Small ribosomal subunit protein eS28

Chain d

Small ribosomal subunit protein uS14

Chain g

Small ribosomal subunit protein RACK1