J3_9KMV_002

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAAAGAUUAAG*CGCGCAAAUUA*UAGUGACG

Length

30 nucleotides

Bulged bases

9KMV|1|2|A|46, 9KMV|1|2|U|488, 9KMV|1|2|G|513, 9KMV|1|2|U|514, 9KMV|1|2|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMV|1|2|C|37
9KMV|1|2|A|38
9KMV|1|2|A|39
9KMV|1|2|A|40
9KMV|1|2|G|41
9KMV|1|2|A|42
9KMV|1|2|U|43
9KMV|1|2|U|44
9KMV|1|2|A|45
9KMV|1|2|A|46
9KMV|1|2|G|47
*
9KMV|1|2|C|479
9KMV|1|2|G|480
9KMV|1|2|C|481
9KMV|1|2|G|482
9KMV|1|2|C|483
9KMV|1|2|A|484
9KMV|1|2|A|485
9KMV|1|2|A|486
9KMV|1|2|U|487
9KMV|1|2|U|488
9KMV|1|2|A|489
*
9KMV|1|2|U|511
9KMV|1|2|A|512
9KMV|1|2|G|513
9KMV|1|2|U|514
9KMV|1|2|G|515
9KMV|1|2|A|516
9KMV|1|2|C|517
9KMV|1|2|G|518

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain J

Small ribosomal subunit protein uS4

Chain X

Small ribosomal subunit protein uS12

Chain Y

Small ribosomal subunit protein eS24